Extreme Learning Machine for the Characterization of Anomalous Diffusion from Single Trajectories

05/06/2021
by   Carlo Manzo, et al.
13

The study of the dynamics of natural and artificial systems has provided several examples of deviations from Brownian behavior, generally defined as anomalous diffusion. The investigation of these dynamics can provide a better understanding of diffusing objects and their surrounding media, but a quantitative characterization from individual trajectories is often challenging. Efforts devoted to improving anomalous diffusion detection using classical statistics and machine learning have produced several new methods. Recently, the anomalous diffusion challenge (AnDi, https://www.andi-challenge.org) was launched to objectively assess these approaches on a common dataset, focusing on three aspects of anomalous diffusion: the inference of the anomalous diffusion exponent; the classification of the diffusion model; and the segmentation of trajectories. In this article, I describe a simple approach to tackle the tasks of the AnDi challenge by combining extreme learning machine and feature engineering (AnDi-ELM). The method reaches satisfactory performance while offering a straightforward implementation and fast training time with limited computing resources, making a suitable tool for fast preliminary screening.

READ FULL TEXT

page 12

page 13

page 14

page 15

page 16

research
06/14/2021

WaveNet-Based Deep Neural Networks for the Characterization of Anomalous Diffusion (WADNet)

Anomalous diffusion, which shows a deviation of transport dynamics from ...
research
08/18/2023

Machine-Learning Solutions for the Analysis of Single-Particle Diffusion Trajectories

Single-particle traces of the diffusive motion of molecules, cells, or a...
research
08/05/2021

Efficient recurrent neural network methods for anomalously diffusing single particle short and noisy trajectories

Anomalous diffusion occurs at very different scales in nature, from atom...
research
01/02/2023

Preface: Characterisation of Physical Processes from Anomalous Diffusion Data

Preface to the special issue "Characterisation of Physical Processes fro...
research
10/10/2022

Characterization of anomalous diffusion through convolutional transformers

The results of the Anomalous Diffusion Challenge (AnDi Challenge) have s...
research
10/05/2020

Identification of Anomalous Diffusion Sources by Unsupervised Learning

Fractional Brownian motion (fBm) is a ubiquitous diffusion process in wh...

Please sign up or login with your details

Forgot password? Click here to reset