Knowledge Integration for Disease Characterization: A Breast Cancer Example

by   Oshani Seneviratne, et al.

With the rapid advancements in cancer research, the information that is useful for characterizing disease, staging tumors, and creating treatment and survivorship plans has been changing at a pace that creates challenges when physicians try to remain current. One example involves increasing usage of biomarkers when characterizing the pathologic prognostic stage of a breast tumor. We present our semantic technology approach to support cancer characterization and demonstrate it in our end-to-end prototype system that collects the newest breast cancer staging criteria from authoritative oncology manuals to construct an ontology for breast cancer. Using a tool we developed that utilizes this ontology, physician-facing applications can be used to quickly stage a new patient to support identifying risks, treatment options, and monitoring plans based on authoritative and best practice guidelines. Physicians can also re-stage existing patients or patient populations, allowing them to find patients whose stage has changed in a given patient cohort. As new guidelines emerge, using our proposed mechanism, which is grounded by semantic technologies for ingesting new data from staging manuals, we have created an enriched cancer staging ontology that integrates relevant data from several sources with very little human intervention.


NaroNet: Objective-based learning of the tumor microenvironment from highly multiplexed immunostained images

We present NaroNet, a Machine Learning framework that integrates the mul...

Improving adherence to endocrine hormonal therapy among breast cancer patients: Study protocol for a randomized controlled trial

Adjuvant endocrine hormonal therapy (EHT) is highly effective and approp...

Breast Cancer Classification Using: Pixel Interpolation

Image Processing represents the backbone research area within engineerin...

Please sign up or login with your details

Forgot password? Click here to reset