Physics-Constrained Predictive Molecular Latent Space Discovery with Graph Scattering Variational Autoencoder
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Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. In particular, generative deep learning models have been used for molecular representation, discovery and design with applications ranging from drug discovery to solar cell development. In this work, we assess the predictive capabilities of a molecular generative model developed based on variational inference and graph theory. The encoder network is based on the scattering transform, which allows for a better generalization of the model in the presence of limited training data. The scattering layers incorporate adaptive spectral filters which are tailored to the training dataset based on the molecular graphs' spectra. The decoding network is a one-shot graph generative model that conditions atom types on molecular topology. We present a quantitative assessment of the latent space in terms of its predictive ability for organic molecules in the QM9 dataset. To account for the limited size training data set, a Bayesian formalism is considered that allows us capturing the uncertainties in the predicted properties.
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