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07/18/2023
LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs
The classical Sankoff algorithm for the simultaneous folding and alignme...
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10/26/2022
LinearCoFold and LinearCoPartition: Linear-Time Algorithms for Secondary Structure Prediction of Interacting RNA molecules
Many ncRNAs function through RNA-RNA interactions. Fast and reliable RNA...
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06/29/2022
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments
Predicting the consensus structure of a set of aligned RNA homologs is a...
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12/31/2019
LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
RNA secondary structure prediction is widely used to understand RNA func...
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12/22/2019