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08/18/2023
Wheeler maps
Motivated by challenges in pangenomic read alignment, we propose a gener...
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06/26/2023
Prefix-free graphs and suffix array construction in sublinear space
A recent paradigm shift in bioinformatics from a single reference genome...
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09/19/2022
MARIA: Multiple-alignment r-index with aggregation
There now exist compact indexes that can efficiently list all the occurr...
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06/30/2022
Prefix-free parsing for building large tunnelled Wheeler graphs
We propose a new technique for creating a space-efficient index for larg...
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06/25/2021