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05/19/2023
Bugs as Features (Part II): A Perspective on Enriching Microbiome-Gut-Brain Axis Analyses with Multidisciplinary Techniques
The microbiome-gut-brain-axis field is multidisciplinary, benefiting fro...
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07/25/2022
Treating Bugs as Features: A compositional guide to the statistical analysis of the microbiome-gut-brain axis
There has been a growing acknowledgement of the involvement of the gut m...
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05/20/2022
Data Augmentation for Compositional Data: Advancing Predictive Models of the Microbiome
Data augmentation plays a key role in modern machine learning pipelines....
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10/13/2021
A Field Guide to Scientific XAI: Transparent and Interpretable Deep Learning for Bioinformatics Research
Deep learning has become popular because of its potential to achieve hig...
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09/07/2021
Readying Medical Students for Medical AI: The Need to Embed AI Ethics Education
Medical students will almost inevitably encounter powerful medical AI sy...
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04/15/2021
A Critique of Differential Abundance Analysis, and Advocacy for an Alternative
It is largely taken for granted that differential abundance analysis is,...
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03/24/2021
Counterfactual Explanation with Multi-Agent Reinforcement Learning for Drug Target Prediction
Motivation: Several accurate deep learning models have been proposed to ...
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12/10/2020
The Three Ghosts of Medical AI: Can the Black-Box Present Deliver?
Our title alludes to the three Christmas ghosts encountered by Ebenezer ...
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08/18/2020
Trust and Medical AI: The challenges we face and the expertise needed to overcome them
Artificial intelligence (AI) is increasingly of tremendous interest in t...
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06/02/2020