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06/06/2023
Evaluating the Potential of Disaggregated Memory Systems for HPC applications
Disaggregated memory is a promising approach that addresses the limitati...
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03/03/2023
Extreme-scale many-against-many protein similarity search
Similarity search is one of the most fundamental computations that are r...
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07/10/2022
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly
De novo genome assembly, i.e., rebuilding the sequence of an unknown gen...
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10/20/2020
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly
One of the most computationally intensive tasks in computational biology...
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02/12/2020
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
Pairwise sequence alignment is one of the most computationally intensive...
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01/27/2020
diBELLA: Distributed Long Read to Long Read Alignment
We present a parallel algorithm and scalable implementation for genome a...
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01/20/2020
The Parallelism Motifs of Genomic Data Analysis
Genomic data sets are growing dramatically as the cost of sequencing con...
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09/19/2018
Extreme Scale De Novo Metagenome Assembly
Metagenome assembly is the process of transforming a set of short, overl...
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10/30/2017