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06/06/2023
Evaluating the Potential of Disaggregated Memory Systems for HPC applications
Disaggregated memory is a promising approach that addresses the limitati...
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03/03/2023
Extreme-scale many-against-many protein similarity search
Similarity search is one of the most fundamental computations that are r...
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11/18/2021
Parallel Algorithms for Masked Sparse Matrix-Matrix Products
Computing the product of two sparse matrices (SpGEMM) is a fundamental o...
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06/28/2021
Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems
Combinatorial algorithms such as those that arise in graph analysis, mod...
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10/20/2020
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly
One of the most computationally intensive tasks in computational biology...
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10/16/2020
Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale
Sparse matrix-matrix multiplication (SpGEMM) is a widely used kernel in ...
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09/30/2020
Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices
Identifying similar protein sequences is a core step in many computation...
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02/24/2020
Optimizing High Performance Markov Clustering for Pre-Exascale Architectures
HipMCL is a high-performance distributed memory implementation of the po...
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01/20/2020
The Parallelism Motifs of Genomic Data Analysis
Genomic data sets are growing dramatically as the cost of sequencing con...
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10/14/2019